Knowledge Discovery in Proteomics

Capa
CRC Press, 02/09/2005 - 360 páginas
Multi-modal representations, the lack of complete and consistent domain theories, rapid evolution of domain knowledge, high dimensionality, and large amounts of missing information - these are challenges inherent in modern proteomics. As our understanding of protein structure and function becomes ever more complicated, we have reached a point where

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Índice

Introduction
1
Knowledge Management
11
Current Status and Future Perspectives of Mass Spectrometry
39
Graph Theory Analysis of ProteinProtein Interactions
73
HTP Protein Crystallization Approaches
129
Integration of Diverse Data Algorithms and Domains
199
From HighThroughput to Systems Biology
237
References
259
Index
309
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Página 277 - Gygi, SP, Rist, B., Gerber, SA, Turecek, F., Gelb, MH, and Aebersold, R. (1999). Quantitative analysis of complex protein mixtures using isotope-coded affinity tags.
Página 228 - Learning denotes changes in the system that are adaptive in the sense that they enable the system to do the same task or tasks drawn from the same population more efficiently and more effectively the next time" (quotation from HA Simon in [7.2]).
Página 259 - Adams, MD, SE Celniker, RA Holt, CA Evans, JD Gocayne, PG Amanatides, SE Scherer, PW Li, RA Hoskins, RF Galle, RA George, SE Lewis, S. Richards, M. Ashburner, SN Henderson, GG Sutton, JR Wortman, MD Yandell, Q. Zhang, LX Chen, RC Brandon, YH Rogers, RG Blazej, M. Champe, BD Pfeiffer, K. H. Wan, C. Doyle, EG Baxter, G.
Página 281 - Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins.
Página 280 - D. Barker, E. Birney, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, and M. Clamp. The Ensembl genome database project.
Página 303 - III. (2001) Largescale analysis of the yeast proteome by multidimensional protein identification technology.
Página 281 - T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, and Y. Sakaki. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 98:4569-4574, 2001.

Acerca do autor (2005)

Jurisica, Igor; Wigle, Dennis

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